STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0635PFAM: sulfatase; KEGG: btl:BALH_4730 sulfatase. (804 aa)    
Predicted Functional Partners:
Cphy_1892
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_0710 putative monogalactosyldiacylglycerol synthase.
  
 
 0.920
Cphy_3626
Chloramphenicol 3-O-phosphotransferase-like protein; KEGG: mlo:mll3789 weak similarity to chloramphenicol phosphotransferase.
  
     0.504
Cphy_0899
KEGG: cth:Cthe_2569 hypothetical protein.
  
     0.473
Cphy_2123
SMART: transglutaminase domain protein; KEGG: ssa:SSA_0384 hypothetical protein.
  
     0.456
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.456
Cphy_0634
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bth:BT_4143 putative iron-sulfur cluster binding protein.
       0.449
Cphy_0563
PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2168 propeptide, PepSY amd peptidase M4.
  
     0.444
Cphy_2165
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.427
Cphy_1688
PFAM: glycosyl hydrolase BNR repeat-containing protein; Two component regulator propeller; KEGG: sfu:Sfum_3494 hypothetical protein.
  
     0.424
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.