STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0641PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tde:TDE0027 DHH superfamily protein, subfamily 1. (335 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.619
Cphy_0460
Hypothetical protein; KEGG: mst:Msp_1095 DNA double-strand break repair protein Rad50.
  
     0.606
Cphy_1344
Hypothetical protein; KEGG: cth:Cthe_0634 serine/threonine protein kinase.
  
 
   0.597
Cphy_0043
Hypothetical protein.
  
     0.578
Cphy_2682
Hypothetical protein; KEGG: mmu:20957 synaptonemal complex protein 1.
  
     0.565
Cphy_0351
Hypothetical protein.
  
     0.564
Cphy_0245
KEGG: cth:Cthe_2622 hypothetical protein.
  
     0.556
Cphy_0146
Hypothetical protein.
  
     0.546
Cphy_2712
KEGG: cth:Cthe_0470 hypothetical protein.
  
     0.545
Cphy_3283
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.528
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.