STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0650PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family. (219 aa)    
Predicted Functional Partners:
Cphy_0465
KEGG: bha:BH0709 hypothetical protein.
 
     0.661
Cphy_3567
KEGG: sco:SCO0628 secreted protein.
  
     0.654
Cphy_0600
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase.
  
     0.611
Cphy_3572
KEGG: bth:BT_3593 hypothetical protein.
  
     0.556
Cphy_0388
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
     0.501
Cphy_0649
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: fno:Fnod_1562 transposase IS204/IS1001/IS1096/IS1165 family protein.
       0.497
Cphy_0626
Hypothetical protein; KEGG: lmo:lmo2433 similar to acetylesterase.
  
   
 0.435
Cphy_0466
PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein.
  
     0.430
Cphy_0874
KEGG: afm:AFUA_3G12590 conserved hypothetical protein.
  
   0.430
Cphy_1395
KEGG: afm:AFUA_3G12590 conserved hypothetical protein.
  
   0.427
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.