STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0655PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_4085 transcriptional regulator, GntR family. (257 aa)    
Predicted Functional Partners:
Cphy_1062
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: amt:Amet_3783 mannitol dehydrogenase, C-terminal domain.
 
   
 0.688
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
   
 0.687
Cphy_0656
KEGG: pat:Patl_3646 phosphomannose isomerase-like.
       0.559
Cphy_0654
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A.
 
     0.530
Cphy_3829
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_4096 GntR domain protein.
 
  
 0.529
Cphy_1313
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cbe:Cbei_0309 GntR domain protein.
 
  
 0.463
Cphy_0596
PFAM: conserved hypothetical protein; KEGG: oih:OB3234 hypothetical protein.
 
   
 0.462
uxaC
PFAM: Glucuronate isomerase; KEGG: cbe:Cbei_1832 glucuronate isomerase.
 
   
 0.450
Cphy_3021
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cbe:Cbei_0212 acetolactate synthase, small subunit.
   
    0.444
Cphy_0653
PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ooe:OEOE_1670 H+/gluconate symporter or related permease.
 
     0.434
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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