STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0657PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family. (205 aa)    
Predicted Functional Partners:
Cphy_0658
KEGG: pmy:Pmen_4204 hypothetical protein.
 
     0.908
Cphy_0660
PFAM: beta-lactamase domain protein; KEGG: tma:TM1295 hypothetical protein.
 
  
 0.813
Cphy_0661
KEGG: sus:Acid_2910 hypothetical protein.
 
     0.754
Cphy_2254
PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family.
  
    0.747
Cphy_1663
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC.
  
     0.746
Cphy_1513
PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family.
  
     0.724
Cphy_0666
Hypothetical protein; KEGG: bvu:BVU_0177 glycoside hydrolase family 28.
  
     0.713
Cphy_1662
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein.
  
    0.706
Cphy_1010
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein.
  
   
 0.703
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
  
    0.677
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.