Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_0667PFAM: regulatory protein TetR; KEGG: sus:Acid_2363 transcriptional regulator, TetR family. (200 aa)    
Predicted Functional Partners:
Cphy_0666
Hypothetical protein; KEGG: bvu:BVU_0177 glycoside hydrolase family 28.
 
     0.682
Cphy_1790
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cbe:Cbei_3628 DNA binding domain, excisionase family.
  
     0.520
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
     0.499
Cphy_1663
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC.
  
     0.441
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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