STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0673PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein. (253 aa)    
Predicted Functional Partners:
Cphy_0672
Putative transcriptional regulator, TetR family; KEGG: ckl:CKL_2492 hypothetical protein.
 
     0.863
Cphy_1444
PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease.
  
    0.706
Cphy_1760
KEGG: ctc:CTC01924 membrane spanning protein.
  
     0.653
Cphy_3580
PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein.
  
  
 0.646
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
 
    0.612
Cphy_1360
KEGG: dsy:DSY1049 hypothetical protein.
 
  
 0.577
Cphy_0671
PFAM: Methyltransferase type 11; KEGG: rca:Rcas_1539 magnesium protoporphyrin O-methyltransferase.
 
     0.575
Cphy_0674
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BG12132 similar to transcriptional regulator (AraC/XylS family).
       0.528
Cphy_0592
PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein.
  
    0.523
Cphy_3231
PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family.
  
     0.513
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.