STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0676Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family. (183 aa)    
Predicted Functional Partners:
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.763
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.763
Cphy_1513
PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family.
  
     0.762
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.750
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
     0.731
Cphy_2553
KEGG: mac:MA2899 hypothetical protein.
  
     0.697
Cphy_1506
PFAM: NUDIX hydrolase; KEGG: mma:MM_2810 hypothetical protein.
  
     0.658
Cphy_3125
PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02251 hypothetical protein.
  
     0.658
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
     0.657
Cphy_2023
PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein.
  
     0.629
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.