Cphy_0680 protein (Lachnoclostridium phytofermentans)

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Score

Cphy_0680

KEGG: ctc:CTC00666 hypothetical protein. (310 aa)

Predicted Functional Partners:

rpsC

0.905

Cphy_2112

0.902

rpmC

0.896

rplV

0.885

rplC

0.885

rpsQ

0.879

rpsO

0.877

rplN

0.861

rpsG

0.827

rplX

0.827

Your Current Organism:

Lachnoclostridium phytofermentans

NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cphy_0680	Cphy_2112	Cphy_0680	Cphy_2112	KEGG: ctc:CTC00666 hypothetical protein.	KEGG: cth:Cthe_1537 hypothetical protein.	0.902
Cphy_0680	rplC	Cphy_0680	Cphy_3667	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.885
Cphy_0680	rplN	Cphy_0680	Cphy_3657	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.861
Cphy_0680	rplV	Cphy_0680	Cphy_3662	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.885
Cphy_0680	rplX	Cphy_0680	Cphy_3656	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.827
Cphy_0680	rpmC	Cphy_0680	Cphy_3659	KEGG: ctc:CTC00666 hypothetical protein.	PFAM: ribosomal protein L29; KEGG: rsq:Rsph17025_2526 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.896
Cphy_0680	rpsC	Cphy_0680	Cphy_3661	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.905
Cphy_0680	rpsG	Cphy_0680	Cphy_0236	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.827
Cphy_0680	rpsO	Cphy_0680	Cphy_2767	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.877
Cphy_0680	rpsQ	Cphy_0680	Cphy_3658	KEGG: ctc:CTC00666 hypothetical protein.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.879
Cphy_2112	Cphy_0680	Cphy_2112	Cphy_0680	KEGG: cth:Cthe_1537 hypothetical protein.	KEGG: ctc:CTC00666 hypothetical protein.	0.902
rplC	Cphy_0680	Cphy_3667	Cphy_0680	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	KEGG: ctc:CTC00666 hypothetical protein.	0.885
rplC	rplN	Cphy_3667	Cphy_3657	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplC	rplV	Cphy_3667	Cphy_3662	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.999
rplC	rplX	Cphy_3667	Cphy_3656	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
rplC	rpmC	Cphy_3667	Cphy_3659	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	PFAM: ribosomal protein L29; KEGG: rsq:Rsph17025_2526 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.998
rplC	rpsC	Cphy_3667	Cphy_3661	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsG	Cphy_3667	Cphy_0236	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.997
rplC	rpsO	Cphy_3667	Cphy_2767	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.987
rplC	rpsQ	Cphy_3667	Cphy_3658	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.998