STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0694KEGG: efa:EF1239 hypothetical protein. (1113 aa)    
Predicted Functional Partners:
Cphy_0697
PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein.
 
     0.775
Cphy_0693
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bfr:BF1755 hypothetical protein.
 
     0.746
Cphy_3854
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: vch:VC0612 cellobiose/cellodextrin-phosphorylase, putative.
  
   
 0.585
Cphy_1929
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: csc:Csac_1090 glycosyltransferase 36.
  
   
 0.565
Cphy_1631
PFAM: protein of unknown function DUF1037; KEGG: bcl:ABC1573 trehalose utilization protein.
  
    0.533
Cphy_0699
PFAM: glycoside hydrolase family 3 domain protein; KEGG: efa:EF1238 glycosyl hydrolase, family 3; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.529
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
  
 
 
 0.518
Cphy_3314
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase).
   
  
 0.508
Cphy_0696
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component.
 
     0.493
Cphy_0695
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2725 binding-protein-dependent transport systems inner membrane component.
 
     0.489
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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