STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0698Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A. (345 aa)    
Predicted Functional Partners:
Cphy_1060
PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_5753 regulatory protein LacI.
 
    0.760
Cphy_1012
PFAM: regulatory protein GntR HTH; KEGG: gtn:GTNG_1824 transcriptional regulator.
  
     0.758
Cphy_0697
PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein.
 
     0.618
Cphy_0699
PFAM: glycoside hydrolase family 3 domain protein; KEGG: efa:EF1238 glycosyl hydrolase, family 3; Belongs to the glycosyl hydrolase 3 family.
       0.486
Cphy_0696
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2724 binding-protein-dependent transport systems inner membrane component.
       0.430
Cphy_0695
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2725 binding-protein-dependent transport systems inner membrane component.
       0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.