STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0701KEGG: swo:Swol_2178 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Cphy_0702
KEGG: swo:Swol_2179 hypothetical protein.
 
    0.979
Cphy_0703
PFAM: Spore coat protein CotH; KEGG: mla:Mlab_1597 hypothetical protein.
 
     0.928
Cphy_0202
PFAM: MgtC/SapB transporter; KEGG: cbe:Cbei_2642 MgtC/SapB transporter.
  
    0.669
Cphy_0705
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cpf:CPF_2640 sensor histidine kinase.
 
     0.569
Cphy_0704
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0774 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
       0.502
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.