STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0711PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tde:TDE1730 glycosyl hydrolase, family 2; Belongs to the glycosyl hydrolase 2 family. (626 aa)    
Predicted Functional Partners:
Cphy_3567
KEGG: sco:SCO0628 secreted protein.
  
     0.617
Cphy_0874
KEGG: afm:AFUA_3G12590 conserved hypothetical protein.
  
   
 0.543
Cphy_1395
KEGG: afm:AFUA_3G12590 conserved hypothetical protein.
  
   
 0.541
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
  
  
 0.531
Cphy_0391
KEGG: rba:RB7999 hypothetical protein; Belongs to the DapA family.
  
   
 0.457
Cphy_0392
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein.
  
    0.448
Cphy_0388
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
     0.447
Cphy_3160
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cth:Cthe_2197 carbohydrate binding family 6; Belongs to the glycosyl hydrolase 2 family.
  
     0.433
Cphy_1304
KEGG: pla:Plav_0415 hypothetical protein.
 
     0.414
Cphy_3572
KEGG: bth:BT_3593 hypothetical protein.
  
     0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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