STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0718KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein. (194 aa)    
Predicted Functional Partners:
Cphy_0721
KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted).
  
     0.722
Cphy_1694
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein.
  
     0.674
Cphy_0682
PFAM: Urea transporter; KEGG: ssp:SSP0266 hypothetical protein.
  
     0.575
Cphy_1891
PFAM: PT repeat-containing protein; KEGG: pfa:PFF0385c hypothetical protein.
  
     0.553
Cphy_3262
PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein.
  
     0.544
Cphy_0418
Hypothetical protein; KEGG: ddi:DDB_0232136 villin.
  
     0.480
Cphy_2809
Chromosome segregation ATPase-like protein; KEGG: bps:BPSS1434 membrane-anchored cell surface protein.
  
     0.473
Cphy_0417
PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
     0.454
Cphy_0858
PFAM: glycoside hydrolase family 30; KEGG: csc:Csac_2513 glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
  
     0.442
Cphy_0824
KEGG: cth:Cthe_0359 hypothetical protein.
  
     0.440
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.