STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0720Flavin-nucleotide-binding protein-like protein; KEGG: ret:RHE_PC00112 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
  
     0.709
Cphy_3310
Hypothetical protein; KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; Belongs to the glycosyl hydrolase 28 family.
  
     0.592
Cphy_0721
KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted).
     
 0.508
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.479
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.479
Cphy_1839
KEGG: mst:Msp_0843 hypothetical protein.
 
     0.465
Cphy_3221
PFAM: Domain of unknown function DUF1801; KEGG: lbl:LBL_1943 hypothetical protein.
 
     0.444
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
     0.435
Cphy_0719
PFAM: protein of unknown function DUF421; KEGG: dsy:DSY1538 hypothetical protein.
       0.433
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.425
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.