STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0724PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: lsa:LSA0106 hypothetical cell surface protein precursor. (419 aa)    
Predicted Functional Partners:
Cphy_3608
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.575
Cphy_0723
Hypothetical protein.
  
    0.507
Cphy_3607
PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase.
  
  
 0.474
Cphy_0745
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cbe:Cbei_2532 peptidase U61, LD-carboxypeptidase A.
 
  
 0.451
Cphy_0725
Hypothetical protein.
       0.443
Cphy_0633
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bcz:pE33L466_0245 possible microcin immunity protein.
 
  
 0.428
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.