STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0733PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0361 ABC transporter-related protein. (252 aa)    
Predicted Functional Partners:
Cphy_0732
PFAM: transport system permease protein; KEGG: bcy:Bcer98_0360 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.996
Cphy_0731
PFAM: transport system permease protein; KEGG: bcl:ABC2895 enterochelin ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.992
Cphy_0734
PFAM: periplasmic binding protein; KEGG: bcy:Bcer98_0362 periplasmic binding protein.
 
  
 0.979
Cphy_2393
PFAM: transport system permease protein; ABC-3 protein; KEGG: bpu:BPUM_3521 iron (Fe) ABC superfamily ATP binding cassette transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.793
Cphy_0561
PFAM: transport system permease protein; ABC-3 protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease protein fecD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.783
Cphy_2666
KEGG: amt:Amet_3774 periplasmic binding protein.
 
  
 0.691
Cphy_0560
PFAM: periplasmic binding protein; KEGG: cth:Cthe_1754 periplasmic binding protein.
 
  
 0.606
Cphy_0730
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cbe:Cbei_4501 helix-turn-helix-domain containing protein, AraC type.
  
    0.512
Cphy_3105
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: spi:MGAS10750_Spy0249 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.