STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0744KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein. (642 aa)    
Predicted Functional Partners:
Cphy_0345
Hypothetical protein; KEGG: bsu:BG10173 unknown.
  
     0.702
Cphy_3443
Hypothetical protein.
  
     0.634
Cphy_3525
PFAM: FeoA family protein.
  
     0.574
Cphy_1651
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter.
  
    0.563
Cphy_0125
PFAM: sulfatase; KEGG: cpf:CPF_1807 hypothetical protein.
  
     0.539
Cphy_0509
Membrane protein; KEGG: cac:CAC1316 predicted membrane protein.
  
     0.532
Cphy_2436
Sodium pump decarboxylase gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.519
Cphy_3743
KEGG: amt:Amet_0345 hypothetical protein.
  
     0.508
Cphy_3896
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
  
     0.507
Cphy_0474
Hypothetical protein.
  
     0.505
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.