STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0780KEGG: cbe:Cbei_3228 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Cphy_2164
Hypothetical protein.
 
     0.690
Cphy_2225
KEGG: cbe:Cbei_2683 alpha/beta superfamily hydrolase.
  
     0.570
Cphy_2283
KEGG: plu:plu1458 unnamed protein product; similar to streptomycin adenyltransferase.
  
     0.515
Cphy_3710
PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dsy:DSY1521 hypothetical protein.
     
  0.499
Cphy_0454
KEGG: dsy:DSY4222 hypothetical protein.
  
     0.466
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
  
     0.465
Cphy_3231
PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family.
  
     0.465
Cphy_1866
KEGG: rci:RCIX1074 hypothetical protein.
  
     0.463
Cphy_2043
PFAM: Endoribonuclease L-PSP; KEGG: sph:MGAS10270_Spy1823 translation initiation inhibitor.
  
     0.451
Cphy_2209
KEGG: bha:BH1891 hypothetical protein.
  
     0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.