STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0781PFAM: protein of unknown function DUF955; KEGG: cbe:Cbei_3960 protein of unknown function DUF955. (232 aa)    
Predicted Functional Partners:
Cphy_0782
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor.
  
  
 0.762
Cphy_0827
PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB.
  
     0.590
Cphy_0744
KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein.
 
     0.503
Cphy_0474
Hypothetical protein.
  
     0.482
Cphy_1742
Transcriptional regulator, CdaR; KEGG: cac:CA_P0121 Leu-rich protein family protein, YaeG (E.coli) homolog.
  
     0.465
Cphy_0783
KEGG: drm:Dred_2611 hypothetical protein.
       0.458
Cphy_0828
Hypothetical protein; KEGG: ctc:CTC01777 spore germination protein KC.
  
     0.442
Cphy_0780
KEGG: cbe:Cbei_3228 hypothetical protein.
       0.423
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: high (88%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.