STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0790KEGG: cdf:CD2903 putative phage cell wall hydrolase. (318 aa)    
Predicted Functional Partners:
Cphy_0792
KEGG: cdf:CD2901 phage protein.
 
    0.955
Cphy_0793
KEGG: cdf:CD2900 putative phage tail protein.
 
    0.955
Cphy_0791
KEGG: dsy:DSY3951 hypothetical protein.
 
     0.950
Cphy_0794
KEGG: cdf:CD2899 phage protein.
 
     0.950
Cphy_0789
PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 putative phage cell wall hydrolase.
 
    0.943
Cphy_0788
TIGRFAM: phage tape measure protein; KEGG: cth:Cthe_2488 phage tape measure protein.
 
     0.934
Cphy_0787
PFAM: XkdN-like protein; KEGG: cdf:CD2908 phage protein.
 
     0.873
Cphy_0785
KEGG: cdf:CD2910 phage protein.
 
    0.841
Cphy_0786
KEGG: cdf:CD2909 phage protein.
 
     0.838
Cphy_2950
PFAM: Baseplate J family protein; KEGG: cdf:CD2900 putative phage tail protein.
 
    0.812
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.