STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0798TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bha:BH0965 unknown conserved protein. (160 aa)    
Predicted Functional Partners:
Cphy_0799
KEGG: dsy:DSY4643 hypothetical protein.
       0.773
Cphy_0794
KEGG: cdf:CD2899 phage protein.
 
     0.561
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
  
     0.548
Cphy_0793
KEGG: cdf:CD2900 putative phage tail protein.
 
    0.530
Cphy_0790
KEGG: cdf:CD2903 putative phage cell wall hydrolase.
 
     0.493
Cphy_0789
PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 putative phage cell wall hydrolase.
 
     0.487
Cphy_1583
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains.
  
     0.484
Cphy_3748
PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase.
  
    0.483
Cphy_0792
KEGG: cdf:CD2901 phage protein.
       0.428
Cphy_0791
KEGG: dsy:DSY3951 hypothetical protein.
       0.427
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.