STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0799KEGG: dsy:DSY4643 hypothetical protein. (216 aa)    
Predicted Functional Partners:
Cphy_0798
TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: bha:BH0965 unknown conserved protein.
       0.773
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
   
   0.654
Cphy_3457
PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein.
  
 
 0.462
Cphy_2086
PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein.
  
 
 0.459
Cphy_2085
PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein.
  
 
 0.453
Cphy_0797
Hypothetical protein.
       0.427
Cphy_0793
KEGG: cdf:CD2900 putative phage tail protein.
       0.420
Cphy_0789
PFAM: Peptidoglycan-binding LysM; KEGG: cdf:CD2904 putative phage cell wall hydrolase.
     
 0.418
Cphy_0796
Hypothetical protein.
       0.417
Cphy_1886
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity.
 
  
 0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.