STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0802PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_1834 binding-protein-dependent transport systems inner membrane component. (274 aa)    
Predicted Functional Partners:
Cphy_0803
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_3310 ABC transporter, ATP-binding protein.
 
  
 0.977
Cphy_1347
PFAM: NMT1/THI5 like domain protein; KEGG: cth:Cthe_2575 hypothetical protein.
 
  
 0.892
Cphy_1153
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4445 hypothetical protein.
 
  
 0.863
Cphy_1152
PFAM: NMT1/THI5 like domain protein; KEGG: dsy:DSY4446 hypothetical protein.
 
  
 0.832
Cphy_3840
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1490 hypothetical protein.
  
  
 0.593
Cphy_3870
KEGG: dsy:DSY1488 hypothetical protein.
  
  
 0.563
Cphy_1150
PFAM: protein of unknown function DUF77; KEGG: dsy:DSY4448 hypothetical protein.
 
    0.561
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.488
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.