STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0805PFAM: extracellular solute-binding protein family 5; KEGG: bcy:Bcer98_0219 extracellular solute-binding protein family 5. (825 aa)    
Predicted Functional Partners:
Cphy_0804
KEGG: mac:MA3471 hypothetical protein.
 
    0.882
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.879
Cphy_0806
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease protein.
 
 
 0.825
Cphy_0807
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2524 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.824
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.773
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.773
Cphy_1207
KEGG: pdi:BDI_0432 putative hexapeptide transferase family protein.
  
   
 0.772
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
  
     0.772
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.771
Cphy_0808
KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.768
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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