STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0849PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1675 ABC transporter related. (247 aa)    
Predicted Functional Partners:
Cphy_0848
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shw:Sputw3181_0917 polar amino acid ABC transporter, inner membrane subunit.
 0.998
Cphy_0847
ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein; KEGG: cth:Cthe_2278 extracellular solute-binding protein, family 3.
 
 0.987
Cphy_2671
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ste:STER_1541 ABC-type amino acid transport system, permease component.
 
 
 0.970
Cphy_2672
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgo:SGO_0985 amino acid ABC transporter, permease protein SP0711.
 
 
 0.947
Cphy_2669
PFAM: extracellular solute-binding protein family 3; KEGG: sgo:SGO_0982 amino acid ABC transporter, amino acid-binding protein.
 
 
 0.853
Cphy_2113
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1536 ABC transporter related protein.
 
     
0.656
argG
PFAM: argininosuccinate synthase; KEGG: cth:Cthe_0179 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.531
Cphy_2430
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0396 ABC transporter related protein.
 
     
0.511
Cphy_0337
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01811 multidrug resistance ABC transporter ATP-binding and permease protein.
 
     
0.497
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 phosphoribosyl-AMP cyclohydrolase; In the C-terminal section; belongs to the PRA-PH family.
  
    0.470
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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