STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0850Hypothetical protein; KEGG: ctc:CTC00469 predicted transglutaminase/protease. (428 aa)    
Predicted Functional Partners:
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
   
 0.836
Cphy_0871
PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.
  
 
 0.729
Cphy_2677
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein.
  
 
 0.729
Cphy_2106
PFAM: protein of unknown function DUF323; KEGG: cbe:Cbei_3040 protein of unknown function DUF323.
  
   0.708
Cphy_3823
KEGG: rno:679495 hypothetical protein LOC679495.
  
   0.708
Cphy_0490
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
   
 
 0.666
Cphy_0517
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.666
Cphy_1164
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
   
 
 0.666
Cphy_1744
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: drm:Dred_3003 short-chain dehydrogenase/reductase SDR.
   
 
 0.666
Cphy_2534
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssv:SSU98_1240 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase).
   
 
 0.666
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.