STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0855PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_1784 predicted transport protein. (755 aa)    
Predicted Functional Partners:
Cphy_0856
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2513 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
    
0.828
Cphy_0854
PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: dsy:DSY0085 hypothetical protein.
       0.773
Cphy_0857
Cellobiose phosphorylase-like protein; KEGG: bhe:BH00920 cyclic beta 1-2 glucan synthetase.
   
   0.457
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.442
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
    
 0.438
Cphy_0853
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cac:CAC1454 membrane associated histidine kinase-like ATPase.
       0.412
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.