STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0865KEGG: fno:Fnod_0956 hypothetical protein. (1030 aa)    
Predicted Functional Partners:
Cphy_0858
PFAM: glycoside hydrolase family 30; KEGG: csc:Csac_2513 glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
     0.754
Cphy_0857
Cellobiose phosphorylase-like protein; KEGG: bhe:BH00920 cyclic beta 1-2 glucan synthetase.
 
     0.721
Cphy_3404
PFAM: glycoside hydrolase family 30; KEGG: stm:STM4426 activated by transcription factor SsrB, similar to Homo sapiens lysosomal glucosyl ceramidase; Belongs to the glycosyl hydrolase 30 family.
 
     0.698
Cphy_0864
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_2550 response regulator receiver protein.
 
     0.690
Cphy_0862
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2552 extracellular solute-binding protein, family 1.
 
     0.649
Cphy_3388
Glucan endo-1,3-beta-D-glucosidase; PFAM: glycoside hydrolase family 16; Carbohydrate-binding CenC domain protein; Ig domain protein group 2 domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16.
 
     0.632
Cphy_1515
KEGG: cbe:Cbei_4414 hypothetical protein.
  
     0.597
Cphy_0863
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2551 integral membrane sensor signal transduction histidine kinase.
       0.582
Cphy_1631
PFAM: protein of unknown function DUF1037; KEGG: bcl:ABC1573 trehalose utilization protein.
   
    0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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