Cphy_0870 protein (Lachnoclostridium phytofermentans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Cphy_0870

KEGG: cth:Cthe_0907 hypothetical protein. (46 aa)

Predicted Functional Partners:

Cphy_0871

0.968

Cphy_2677

0.886

secF

0.503

Cphy_3753

0.487

Your Current Organism:

Lachnoclostridium phytofermentans

NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cphy_0870	Cphy_0871	Cphy_0870	Cphy_0871	KEGG: cth:Cthe_0907 hypothetical protein.	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.	0.968
Cphy_0870	Cphy_2677	Cphy_0870	Cphy_2677	KEGG: cth:Cthe_0907 hypothetical protein.	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein.	0.886
Cphy_0870	Cphy_3753	Cphy_0870	Cphy_3753	KEGG: cth:Cthe_0907 hypothetical protein.	KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family.	0.487
Cphy_0870	secF	Cphy_0870	Cphy_0716	KEGG: cth:Cthe_0907 hypothetical protein.	Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.503
Cphy_0871	Cphy_0870	Cphy_0871	Cphy_0870	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.	KEGG: cth:Cthe_0907 hypothetical protein.	0.968
Cphy_0871	Cphy_3753	Cphy_0871	Cphy_3753	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.	KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family.	0.433
Cphy_0871	secF	Cphy_0871	Cphy_0716	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.	Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.487
Cphy_2677	Cphy_0870	Cphy_2677	Cphy_0870	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein.	KEGG: cth:Cthe_0907 hypothetical protein.	0.886
Cphy_2677	secF	Cphy_2677	Cphy_0716	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein.	Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.487
Cphy_3753	Cphy_0870	Cphy_3753	Cphy_0870	KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family.	KEGG: cth:Cthe_0907 hypothetical protein.	0.487
Cphy_3753	Cphy_0871	Cphy_3753	Cphy_0871	KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family.	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.	0.433
secF	Cphy_0870	Cphy_0716	Cphy_0870	Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	KEGG: cth:Cthe_0907 hypothetical protein.	0.503
secF	Cphy_0871	Cphy_0716	Cphy_0871	Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.	0.487
secF	Cphy_2677	Cphy_0716	Cphy_2677	Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cbf:CLI_3234 radical SAM domain protein.	0.487