STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0872PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_2481 methyltransferase type 11. (206 aa)    
Predicted Functional Partners:
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
 
   
 0.737
Cphy_0871
PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.
       0.590
Cphy_1409
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY4360 hypothetical protein.
 
   
 0.504
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
 
 0.486
Cphy_3179
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0355 hypothetical protein.
 
   
 0.436
Cphy_3197
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A2327 methylase.
 
  
 0.431
Cphy_0029
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_3033 possible UbiE/COQ5 methyltransferase family.
 
   
 0.403
Cphy_0873
Hypothetical protein.
       0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.