STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0878Hypothetical protein; KEGG: cbe:Cbei_1909 membrane -like protein. (286 aa)    
Predicted Functional Partners:
Cphy_0691
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cth:Cthe_1802 cobalt ABC transporter, inner membrane subunit CbiQ.
  
 
 0.753
Cphy_1383
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cbe:Cbei_3712 cobalt ABC transporter, inner membrane subunit CbiQ.
  
 
 0.753
ecfT
Cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.753
ecfA-2
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.606
Cphy_0692
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1801 ABC transporter related protein.
   
 
 0.552
Cphy_1384
ABC transporter related; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
   
 
 0.552
ecfA
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
 0.552
Cphy_3710
PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dsy:DSY1521 hypothetical protein.
 
     0.421
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.