STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0914PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1094 ABC transporter, ATP-binding protein. (290 aa)    
Predicted Functional Partners:
Cphy_0912
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cpf:CPF_1092 RNA polymerase sigma-70 factor, ECF family.
 
    0.890
Cphy_0913
KEGG: cpf:CPF_1093 hypothetical protein.
       0.780
Cphy_0915
KEGG: cpf:CPF_1095 hypothetical protein.
       0.780
Cphy_0916
KEGG: cpf:CPF_1096 hypothetical protein.
       0.759
Cphy_3577
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein.
    
0.747
Cphy_0944
KEGG: dsy:DSY2794 hypothetical protein.
 
 
 0.520
Cphy_1407
Hypothetical protein.
  
 
 0.481
Cphy_3514
KEGG: pth:PTH_0772 hypothetical membrane protein.
  
 
 0.469
Cphy_0360
Hypothetical protein; KEGG: cac:CAC2733 uncharacterized conserved membrane protein.
  
 
 0.455
Cphy_2114
KEGG: cth:Cthe_1535 hypothetical protein.
  
 
 0.445
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.