STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0932PFAM: polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: bth:BT_2964 chondroitinase AC precursor. (750 aa)    
Predicted Functional Partners:
Cphy_0933
KEGG: fjo:Fjoh_4231 hypothetical protein.
 
     0.687
Cphy_0934
PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.
 
   
 0.681
Cphy_0931
PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi03168 similar to lipoprotein; RBL03402.
       0.507
Cphy_3028
Alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase.
 
     0.490
Cphy_3029
PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.
 
   
 0.448
cutC-2
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
  
     0.432
Cphy_0776
PFAM: glycosyl hydrolase family 88; KEGG: bcl:ABC3274 unsaturated glucuronyl hydrolase.
 
   
 0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.