STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0941KEGG: cno:NT01CX_1307 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Cphy_0940
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY2792 hypothetical protein.
 
   
 0.914
Cphy_0944
KEGG: dsy:DSY2794 hypothetical protein.
 
     0.821
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.529
Cphy_0280
KEGG: cac:CAC3435 hypothetical protein.
  
     0.488
Cphy_1400
PFAM: GCN5-related N-acetyltransferase; KEGG: cbf:CLI_2651 acetyltransferase, GNAT family.
  
     0.463
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
     0.459
Cphy_0939
Hypothetical protein; KEGG: mba:Mbar_A1995 cell surface protein.
       0.410
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.