STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0944KEGG: dsy:DSY2794 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Cphy_0941
KEGG: cno:NT01CX_1307 hypothetical protein.
 
     0.795
Cphy_2913
KEGG: dsy:DSY3591 hypothetical protein.
  
     0.673
Cphy_0940
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY2792 hypothetical protein.
 
    0.623
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.533
Cphy_1984
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbh:CLC_1022 ABC transporter, ATP-binding protein.
 
   0.489
Cphy_0280
KEGG: cac:CAC3435 hypothetical protein.
  
     0.455
Cphy_0999
KEGG: amt:Amet_2129 hypothetical protein.
  
     0.453
Cphy_3904
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component.
 
   0.418
Cphy_0914
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1094 ABC transporter, ATP-binding protein.
 
   0.415
Cphy_1422
KEGG: cbh:CLC_2056 hypothetical protein.
  
     0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.