Cphy_0946 protein (Lachnoclostridium phytofermentans)

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Cphy_0946

RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)

Predicted Functional Partners:

Cphy_0947

0.773

Cphy_2804

0.542

rpoC

0.493

rpoB

0.478

Cphy_2448

0.430

rpoZ

0.419

rpoA

0.419

Your Current Organism:

Lachnoclostridium phytofermentans

NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cphy_0946	Cphy_0947	Cphy_0946	Cphy_0947	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein.	0.773
Cphy_0946	Cphy_2448	Cphy_0946	Cphy_2448	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	PFAM: MCP methyltransferase CheR-type; KEGG: csc:Csac_0981 protein-glutamate O-methyltransferase.	0.430
Cphy_0946	Cphy_2804	Cphy_0946	Cphy_2804	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein.	0.542
Cphy_0946	rpoA	Cphy_0946	Cphy_3639	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.419
Cphy_0946	rpoB	Cphy_0946	Cphy_3687	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.478
Cphy_0946	rpoC	Cphy_0946	Cphy_3686	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.493
Cphy_0946	rpoZ	Cphy_0946	Cphy_2879	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.419
Cphy_0947	Cphy_0946	Cphy_0947	Cphy_0946	Hypothetical protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.773
Cphy_2448	Cphy_0946	Cphy_2448	Cphy_0946	PFAM: MCP methyltransferase CheR-type; KEGG: csc:Csac_0981 protein-glutamate O-methyltransferase.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.430
Cphy_2804	Cphy_0946	Cphy_2804	Cphy_0946	Hypothetical protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.542
rpoA	Cphy_0946	Cphy_3639	Cphy_0946	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.419
rpoA	rpoB	Cphy_3639	Cphy_3687	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	Cphy_3639	Cphy_3686	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoZ	Cphy_3639	Cphy_2879	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.998
rpoB	Cphy_0946	Cphy_3687	Cphy_0946	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.478
rpoB	rpoA	Cphy_3687	Cphy_3639	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	Cphy_3687	Cphy_3686	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	Cphy_3687	Cphy_2879	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.997
rpoC	Cphy_0946	Cphy_3686	Cphy_0946	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ldb:Ldb1881 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.493
rpoC	rpoA	Cphy_3686	Cphy_3639	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999

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