STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0953KEGG: cdf:CD0593 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Cphy_0992
KEGG: cdf:CD1724 hypothetical protein.
 
     0.758
Cphy_2209
KEGG: bha:BH1891 hypothetical protein.
  
     0.701
Cphy_1806
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 putative conserved repeat domain protein.
  
     0.623
Cphy_1766
PFAM: TfoX domain protein; KEGG: cbf:CLI_0805 TfoX domain protein.
  
     0.543
Cphy_0952
PFAM: GCN5-related N-acetyltransferase; KEGG: ssa:SSA_1614 acetyltransferase, GNAT family, putative.
       0.542
Cphy_2159
KEGG: bha:BH1891 hypothetical protein.
  
     0.529
Cphy_2039
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein.
  
     0.509
Cphy_2506
KEGG: btl:BALH_1130 hypothetical protein.
  
     0.505
Cphy_0950
PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_3606 GCN5-related N-acetyltransferase.
 
     0.500
Cphy_1633
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ckl:CKL_0067 hypothetical protein.
  
     0.479
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.