STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0987PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cdf:CD0827 rubredoxin oxidoreductase (desulfoferrodoxin). (124 aa)    
Predicted Functional Partners:
Cphy_0262
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dps:DP1647 flavoprotein.
  
 0.687
Cphy_0986
Hypothetical protein.
       0.686
Cphy_1570
Ferritin Dps family protein; Iron-storage protein.
  
  
 0.674
Cphy_2780
PFAM: Rubrerythrin; KEGG: cdf:CD2845 rubrerythrin.
 
  
 0.625
Cphy_0083
PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
  
  
 0.582
Cphy_0524
PFAM: Rubrerythrin; KEGG: cdf:CD0825 rubrerythrin.
 
  
 0.517
Cphy_3786
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_3119 flavin reductase-like, FMN-binding.
  
  
 0.506
Cphy_0985
KEGG: cno:NT01CX_2017 hypothetical protein.
       0.413
Cphy_3815
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: chy:CHY_1135 transcriptional regulator, Fur family; Belongs to the Fur family.
     
 0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.