STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1003PFAM: FMN-binding domain protein; KEGG: dsy:DSY1155 probable chlorophenol reductive dehalogenase. (576 aa)    
Predicted Functional Partners:
Cphy_2052
PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
     0.450
Cphy_1803
Transposase; KEGG: ckl:CKL_2277 predicted transposase.
  
     0.412
Cphy_2597
Transposase; KEGG: ckl:CKL_2277 predicted transposase.
  
     0.412
Cphy_2728
Transposase; KEGG: ckl:CKL_2277 predicted transposase.
  
     0.412
Cphy_1361
KEGG: dsy:DSY3684 hypothetical protein.
  
     0.406
Cphy_1002
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.404
Cphy_1043
PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_1527 radical SAM domain protein.
  
     0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.