STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1010Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Cphy_2254
PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family.
 
    0.726
Cphy_1663
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC.
 
  
 0.709
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.705
Cphy_0657
PFAM: regulatory protein TetR; KEGG: tde:TDE0332 transcriptional regulator, TetR family.
  
   
 0.703
Cphy_0658
KEGG: pmy:Pmen_4204 hypothetical protein.
  
     0.686
Cphy_1967
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1949 hypothetical protein.
  
     0.614
Cphy_1662
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cbe:Cbei_3138 cupin 2, conserved barrel domain protein.
 
    0.595
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
 
   
 0.589
Cphy_0161
YkgB; KEGG: bld:BLi04142 YkgB.
  
     0.574
Cphy_1345
PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA.
     
 0.574
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.