STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1016Hypothetical protein. (358 aa)    
Predicted Functional Partners:
Cphy_1017
Hypothetical protein.
      
0.723
Cphy_1014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2416 ABC-type sugar transport systems, permease components.
       0.705
Cphy_1015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease.
       0.705
Cphy_1018
Hypothetical protein.
       0.684
Cphy_1013
PFAM: extracellular solute-binding protein family 1; KEGG: bay:RBAM_029660 YurO.
       0.664
Cphy_1019
Kojibiose phosphorylase; Phosphorylase showing strict alpha-1,3-regioselectivity and producing 3-O-alpha-D-glucopyranosyl-L-rhamnopyranose. Specific for L- rhamnose as acceptor and beta-D-glucose 1-phosphate as donor. Does not phosphorylate alpha,alpha-trehalose, kojibiose, nigerose, or maltose.
       0.445
Cphy_1020
Hypothetical protein.
       0.445
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.