STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1032PFAM: PfkB domain protein; KEGG: cbh:CLC_1712 kinase, PfkB family. (318 aa)    
Predicted Functional Partners:
Cphy_1031
Hypothetical protein.
       0.727
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
  
  
 0.704
Cphy_1030
Hypothetical protein; KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase.
       0.639
hisA
KEGG: cth:Cthe_2887 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein.
  
    0.614
Cphy_0581
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc03000 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.589
Cphy_0582
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ent:Ent638_4073 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.589
Cphy_1133
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ctc:CTC00906 ribose transport system permease protein rbsC.
  
  
 0.589
Cphy_2011
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.589
Cphy_3278
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.589
Cphy_1819
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: blo:BL1770 widely conserved hypothetical protein in the inosine-uridine preferring nucleoside hydrolase family.
 
  
 0.554
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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