STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1040PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 protein-tyrosine phosphatase. (155 aa)    
Predicted Functional Partners:
Cphy_1933
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
    0.717
Cphy_1041
PFAM: pseudouridine synthase; KEGG: cdf:CD3582 putative pseudouridylate synthase.
  
    0.613
Cphy_2678
PFAM: ribonuclease BN; KEGG: cbe:Cbei_4879 putative ribonuclease BN; Belongs to the UPF0761 family.
  
  
 0.603
Cphy_3478
PFAM: ribonuclease BN; KEGG: cpr:CPR_0272 YihY family protein; Belongs to the UPF0761 family.
  
  
 0.603
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
 
 0.543
Cphy_2153
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein.
  
  
 0.526
Cphy_1213
Capsular exopolysaccharide family; KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.461
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.456
Cphy_1054
KEGG: csc:Csac_0437 hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.439
Cphy_0478
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.412
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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