STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1048PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3276 dehydrogenase. (376 aa)    
Predicted Functional Partners:
Cphy_1049
PFAM: aldo/keto reductase; KEGG: ava:Ava_4145 aldo/keto reductase.
  
  
 0.772
Cphy_0466
PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein.
  
     0.740
Cphy_1050
PFAM: aldo/keto reductase; KEGG: cbe:Cbei_3134 aldo/keto reductase.
       0.690
Cphy_1631
PFAM: protein of unknown function DUF1037; KEGG: bcl:ABC1573 trehalose utilization protein.
 
   
 0.544
Cphy_2089
PFAM: oxidoreductase domain protein; KEGG: art:Arth_3674 oxidoreductase domain protein.
 
     0.521
Cphy_0465
KEGG: bha:BH0709 hypothetical protein.
 
     0.484
Cphy_3811
PFAM: protein of unknown function DUF58; KEGG: csc:Csac_0672 protein of unknown function DUF58.
  
     0.458
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: swo:Swol_0116 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.452
lysS-2
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0828 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.452
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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