Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1054KEGG: csc:Csac_0437 hypothetical protein; Belongs to the glycosyl hydrolase 43 family. (308 aa)    
Predicted Functional Partners:
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
  
  
 0.905
Cphy_3080
KEGG: bsu:BG12861 hypothetical protein.
  
   
 0.528
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
       0.471
Cphy_1056
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
       0.471
Cphy_0343
PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein.
  
   
 0.456
Cphy_1806
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 putative conserved repeat domain protein.
  
 
   0.453
Cphy_1618
KEGG: mgr:MGG_03407 hypothetical protein Pfam: Glyco_hydro_67N.
  
 
   0.451
Cphy_3081
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF1741 putative beta-galactosidase.
  
  
 0.442
Cphy_1040
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 protein-tyrosine phosphatase.
  
 
 0.439
Cphy_2155
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 protein tyrosine phosphatase.
  
 
 0.439
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.