Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_1057PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0707 probable ABC transporter. (312 aa)    
Predicted Functional Partners:
Cphy_1058
ABC-type Na+ efflux pump permease component-like protein; KEGG: sab:SAB2218c probable membrane protein.
 
  
 0.970
Cphy_1059
ABC-type Na+ efflux pump permease component-like protein; KEGG: bay:RBAM_010140 YhaP.
 
  
 0.961
ecfA
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
    
0.547
Cphy_0935
HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein.
  
    0.514
Cphy_1055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
 
     0.512
Cphy_3632
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related.
  
     0.446
Cphy_1056
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE2769 ABC-type multidrug/protein/lipid transport system, ATPase component.
       0.442
Cphy_1209
PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll3709 polysaccharide transporter, PST family.
  
     0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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