STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1074PFAM: extracellular solute-binding protein family 1; KEGG: cgt:cgR_2367 hypothetical protein. (440 aa)    
Predicted Functional Partners:
Cphy_1076
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgt:cgR_2364 hypothetical protein.
 
   0.938
Cphy_1075
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgb:cg2704 ABC-type sugar transport system, permease component.
 
   0.933
Cphy_1077
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_0963 catabolite control protein A.
 
    0.614
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.520
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.520
Cphy_3860
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.
 
   0.465
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.