STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1079KEGG: dsy:DSY0724 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Cphy_1080
PFAM: peptidase U32; KEGG: eba:ebA5191 conserved hypothetical protein, predicted peptidase U32 family.
 
     0.944
Cphy_0827
PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB.
  
     0.730
Cphy_0828
Hypothetical protein; KEGG: ctc:CTC01777 spore germination protein KC.
  
     0.673
Cphy_0935
HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein.
  
     0.627
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
  
     0.610
Cphy_2128
Mannan endo-1,4-beta-mannosidase, Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cth:Cthe_0032 glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
  
    0.606
Cphy_3202
Cellulase; PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B).
  
     0.594
Cphy_2292
PFAM: O-methyltransferase family 3; KEGG: cbh:CLC_2427 O-methyltransferase family protein.
  
  
 0.558
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.534
Cphy_0130
PFAM: Patatin; KEGG: aha:AHA_2929 patatin.
  
     0.525
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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