STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_1080PFAM: peptidase U32; KEGG: eba:ebA5191 conserved hypothetical protein, predicted peptidase U32 family. (318 aa)    
Predicted Functional Partners:
Cphy_1079
KEGG: dsy:DSY0724 hypothetical protein.
 
     0.944
Cphy_2292
PFAM: O-methyltransferase family 3; KEGG: cbh:CLC_2427 O-methyltransferase family protein.
 
  
 0.704
Cphy_1336
PFAM: peptidase U32; KEGG: ctc:CTC02275 protease.
  
     0.672
Cphy_0828
Hypothetical protein; KEGG: ctc:CTC01777 spore germination protein KC.
  
     0.509
Cphy_0827
PFAM: Spore germination protein; KEGG: ctc:CTC01778 spore germination protein KB.
  
     0.505
Cphy_1345
PFAM: prephenate dehydratase; Chorismate mutase; KEGG: ckl:CKL_0789 PheA.
 
   
 0.416
Cphy_1733
KEGG: cth:Cthe_3021 Ech hydrogenase, subunit EchD, putative.
   
   0.406
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.